My PhD uses machine learning to predict zinc binding residues in proteins. Here are some published papers from that, and from previous work.

GraphQL for the delivery of bioinformatics web APIs and application to ZincBind

Sam M Ireland, Andrew C R Martin

ZincBindPredict—Prediction of Zinc Binding Sites in Proteins

Sam M. Ireland, Andrew C. R. Martin

atomium - a Python structure parser

Sam M Ireland, Andrew C R Martin

Inverse pharmacology: Approaches and tools for introducing druggability into engineered proteins

Jamie A. Davies, Sam Ireland, Simon Harding, Joanna L. Sharman, Christopher Southan , Alazne Dominguez-Monedero

ZincBind - The Database of Zinc Binding Sites

Sam M. Ireland, Andrew C. R. Martin

SynPharm: A Guide to PHARMACOLOGY Database Tool for Designing Drug Control into Engineered Proteins

Sam M. Ireland, Christopher Southan, Alazne Dominguez-Monedero, Simon D. Harding, Joanna L. Sharman, and Jamie A. Davies

The IUPHAR/BPS Guide to PHARMACOLOGY in 2018: updates and expansion to encompass the new guide to IMMUNOPHARMACOLOGY

Simon D Harding, Joanna L Sharman, Elena Faccenda, Chris Southan, Adam J Pawson, Sam Ireland, Alasdair J G Gray, Liam Bruce, Stephen P H Alexander, Stephen Anderton, Clare Bryant, Anthony P Davenport, Christian Doerig, Doriano Fabbro, Francesca Levi-Schaffer, Michael Spedding, Jamie A Davies, and NC-IUPHAR

Thermal melt circular dichroism spectroscopic studies for identifying stabilising amphipathic molecules for the voltage-gated sodium channel NavMs

Sam M. Ireland, Altin Sula, B.A. Wallace